Replication files

This document is available online at https://judgelord.github.io/netlit/readme

All of the data and code required to reproduce the figures in the body and supplements are available on the github repository for the netlit package (github.com/judgelord/netlit) as described below. Clone a copy of all replication data and code on the command line with:

git clone github.com/judgelord/netlit

The package will soon be on CRAN. Until then, install the package in R:

devtools::install_github("judgelord/netlit")

Because live package vignettes may change in the future, we have archived submission versions of the data in /replication_data/ and submission versions of the vignettes in /docs/.

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Body text

Figures 2 and 3 are generated by the main netlit vignette, with the submission version archived as netlit-replication.Rmd.

• data: /replication_data/
  • /replication_data/literature.rda
  • /replication_data/node_attributes.rda
• code: /docs/netlit-replication.Rmd
  • live: https://judgelord.github.io/netlit/netlit-replication
  • raw: https://github.com/judgelord/netlit/blob/main/docs/netlit-replication.Rmd
• output figures: /docs/netlit-replication_files/figure-html/
  • Figure 2: ggraph-1.png and figure2.pdf
  • Figure 3a: ggraph-subset1.png or figure3a.pdf
  • Figure 3b: ggraph-subset2.png or figure3b.pdf

*Note: The body of the paper includes hand-cropped versions of Figures 3a and 3b that focus on the key part of the network.

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Supplements

Simulating Biased Literature Reviews Supplement

All the figures in the Simulating Biased Literature Reviews Supplement are created by /docs/vignette-bias.Rmd

• data: /replication_data/
  • /replication_data/literature.rda
  • /replication_data/literature_metadata.rda
• code: /docs/vignette-bias.Rmd
  • live: https://judgelord.github.io/netlit/vignette-bias
  • raw: https://github.com/judgelord/netlit/blob/main/docs/vignette-bias.Rmd
• output figures: /docs/vignette-bias_files/figure-html/

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Applied Researcher Experiment Supplement

All the figures in the Applied Researcher Experiment Supplement are created by /docs/vignette-IR.Rmd

• data: /replication_data/
  • /replication_data/IR_evaluations.rda
  • /replication_data/IR_original_networks.rda
• code: /docs/vignette-IR.Rmd
  • live: https://judgelord.github.io/netlit/vignette-IR
  • raw: https://github.com/judgelord/netlit/blob/main/docs/vignette-IR.Rmd
• output figures: /docs/vignette-IR_files/figure-html/